CDS

Accession Number TCMCG005C25027
gbkey CDS
Protein Id XP_020274150.1
Location complement(join(88440697..88440832,88441199..88441374,88452174..88452252,88465121..88465323,88465837..88466103,88469293..88469436,88484033..88484070,88484073..88484331))
Gene LOC109848854
GeneID 109848854
Organism Asparagus officinalis

Protein

Length 434aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA376608;
db_source XM_020418561.1
Definition LOW QUALITY PROTEIN: RNA pseudouridine synthase 2, chloroplastic

EGGNOG-MAPPER Annotation

COG_category A
Description synthase 2, chloroplastic
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03009        [VIEW IN KEGG]
KEGG_ko ko:K06180        [VIEW IN KEGG]
EC 5.4.99.23        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway -
GOs GO:0000154        [VIEW IN EMBL-EBI]
GO:0000455        [VIEW IN EMBL-EBI]
GO:0001522        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006364        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009451        [VIEW IN EMBL-EBI]
GO:0009982        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016072        [VIEW IN EMBL-EBI]
GO:0016853        [VIEW IN EMBL-EBI]
GO:0016866        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0031118        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0042254        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGCTGTCTCTCACAGCCACTCCTACCGCCTCGTCCCTCTCCTCTCCCCTCAAACTCCTCCGCCGAAACCCTAACCCTAGGTACCCCAGAGTCCACTGCTCTTCAACTTCCACCCTCAATTCGGGTCCAAACCCTAATCCACAGCCCGTTAGGGCCAACCACGCCGGAGTTCGGTTCGAAGGGATCGTCGACGTTGGTTCAGCGAAGGCCAGGATCGACTCATGGATCGCTTCANNNNNNNNNNNNNNNNNNNNNNNNGCCGGCCTCGTCGCTGTCAACGGCCGCACCGTCCAAAAGGTTTCACATAGAATTAAGGAAGGAGATAAAGTTAGTTGTACTGTTTCTGAATTGCAACCCTTAAGGGCCGAACCAGAAGATATACCTCTGGATATTGTATTTGAAGATGCTCATGTTCTAGTTGTAAATAAACCTGCACACATGGTTGTTCACCCAGCACCTGGAAATGCTAATGGCACATTAGTAAATGCCGTACTTAATCATTGTAGGCTTCCAACTGCTGCATGCACGGACAACAAAAGGTGCATAGAAAGTGAGGAATGTATTGACTCTTCTGATAATGAGATTGAAGATTTCCCCATTGATCAGTCGATCGAAGAGTTCAGTTCAGACAACAATGACGCCCTTGTGCGCCCTGGGATAGTACACAGGCTAGACAAGGGTACAAGTGGATTACTTGTTATAGCAAAGGATGAACATTCTCATTCCCATTTAGCGGAACAGTTTAAGAATCATATCATCCATCGTGTGTACATCAGTCTTACTTCTGGAGTTCCTCGTCCTGATTCTGGACGTATTGAGGTTCCAATTGCTCGTGATTCGAGTAATCGGATTCGCATGGCTGCTGTTCCTGGGCTGAAGAACAGTAAACATGCTCGCTATGCTGCTAGTAGGTATAAAGTAGTTGAAGTTTTTGCTGGTGGGGGGTCAGCATTGGTGAGATGGAGGTTGGAAACAGGTCGCACCCATCAGATACGAGCACATGCAAAGTATCTGGGAGTACCCCTATTAGGTGATGAATTATATGGAGGAACTAAGGGCATGGCACTGTCACTATTGAAACCAAGAATACCTTCAAATAGTCATGGCCACCTTTCTTGCATGGTATCGAGATTGCAGAGGCCCTGCTTACATGCTTTATCTCTTGGATTTACACACCCTCACACCGGAGTGTATCTGAGATTCTCATGCCCTCCACCAGATGATTTTTCTGAGGTGTTGAGCCTGCTTAGGAGTTTTTCACAGCAAACTGGAGAAAACTCCGATACAGAACTAGAAGTGTGA
Protein:  
MLSLTATPTASSLSSPLKLLRRNPNPRYPRVHCSSTSTLNSGPNPNPQPVRANHAGVRFEGIVDVGSAKARIDSWIASXXXXXXXXAXGLVAVNGRTVQKVSHRIKEGDKVSCTVSELQPLRAEPEDIPLDIVFEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHCRLPTAACTDNKRCIESEECIDSSDNEIEDFPIDQSIEEFSSDNNDALVRPGIVHRLDKGTSGLLVIAKDEHSHSHLAEQFKNHIIHRVYISLTSGVPRPDSGRIEVPIARDSSNRIRMAAVPGLKNSKHARYAASRYKVVEVFAGGGSALVRWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMALSLLKPRIPSNSHGHLSCMVSRLQRPCLHALSLGFTHPHTGVYLRFSCPPPDDFSEVLSLLRSFSQQTGENSDTELEV